Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015951180.1_cds_XP_016491307.1_81637
CDS Infomation

[gene=LOC107810987] [db_xref=GeneID:107810987] [protein=probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9] [protein_id=XP_016491307.1] [location=join(7925..8028,8126..8270,9396..9470,10024..10113,10392..10471,21240..21309,21425..21510,22128..22188,22395..22490,22874..22973,23563..23609,23691..23774,23880..23933,24523..24623,25202..25292,25738..25914)] [gbkey=CDS]
Sequence

ATGTCCCAATTTTGGAAACCAGGAACTGAACGTCCCCGTCTTGTAGATGATGAAGAGGGT
GGTGTTCTGCTCTACCCCACTTCTTCTTCCTCTTCTTCCTCCGGATTTGGTTATGGGAGT
TTAGAGAAGCAAAGGCAGAGGCTACCTGTGTACAAGTACAGAACTGATATCCTTTACTTA
GTGGAGACTCATGCCACTACCATTATTGTTGGAGAAACTGGCAGTGGCAAAACCACTCAA
ATTCCTCAGTACCTCAAAGAAGCTGGCTGGGCTGAGGGAGGGCGTATGATAGCATGCACC
CAGCCAAGGAGGCTGGCAGTCCAGGCAGTTGCTTCAAGAGTTGCCGAAGAAATGGATGTT
AAACTTGGTGAAGAAGTTGGTTATACTATTCGATTTGAAGATATCACAAATGAGGAATTA
ACTAGGGTCAAATTTCTTACTGATGGAGTTTTGCTGAGGGAAATGATGGATGATCCTCTA
TTGAGCAAGTATAGTGTGATAATGGTGGATGAAGCCCACGAAAGGTCCCTCTCGACGGAC
ATCTTATTGGGACTACTGAAAAAGATTCAAAGGCGTCGTCCTGAGCTGCGTATTATAATA
TCATCGGCTACGATTGAAGCAAAATCAATGGCTGCTTTCTTTAATACCAGCAAAAAACGA
CGAGAGCAGGAGCAAGGACCAACAATAGAACCTGCTATTCTGTCAGTTGAGGGTAGGGGA
TTTAATGTGGAGATATTCTATGTTGATGATCCTGTTTCTGATTACGTTCGGGCCGTTATT
TCTACAGTGTTGTCGATCCATGACCAGGAGCGGACGGGAGATATCTTGGTGTTTCTCACT
GGTCAAGATGATATTGATGCTGCAATACAGTTGCTCACCGAAGAAGCCCAAAGTAGTGGG
AAGCAAGGACTGGTTGCTGTGCCACTATACTCGGGGCTTCCTCGAGCAGATCAGGATCTT
GTGTTTTCCCCTACTCCTAGAGGAAAAAGAAAAGTGATATTTTCAACGAATATTGCTGAG
ACGTCATTGACTTTAGAGGGAATTGTCTATGTCGTTGATAGTGGGTTCTCAAAACAACGG
TTCTACAACCCGATTTCAGATATTGAGAATTTGGTAGTGGCACCAATATCGAAGGCATCT
GCTCGACAAAGGGCTGGTAGAGCTGGAAGAGTTCGACCTGGGAAGTGTTTTAGGCTCTAC
ACAGAAGATTATTTTGCCAGTGAGATGTCTATTGTGGGAATACCGGAGATACAGAGATCA
AACCTTGTTTCCTGTGTCATCCAGTTGAAGGCCTTAGGTATTGATAATATCTTGGGTTTT
GATTGGCCAGCTTCTCCATCACCTGAAGCGATGATAAGAGCGCTTGAAATACTGTACTCA
CTTGGAGTATTAGATGACGATGCCAAACTTACTTCACCTACTGGGTTTCAAGTTGCAGAG
TTTCCACTGGTATGTTTCTAA

Peptide Sequence

PEP ID

XP_016491307.1
PEP Infomation

PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 [Nicotiana tabacum]
Sequence

MSQFWKPGTERPRLVDDEEGGVLLYPTSSSSSSSGFGYGSLEKQRQRLPVYKYRTDILYL
VETHATTIIVGETGSGKTTQIPQYLKEAGWAEGGRMIACTQPRRLAVQAVASRVAEEMDV
KLGEEVGYTIRFEDITNEELTRVKFLTDGVLLREMMDDPLLSKYSVIMVDEAHERSLSTD
ILLGLLKKIQRRRPELRIIISSATIEAKSMAAFFNTSKKRREQEQGPTIEPAILSVEGRG
FNVEIFYVDDPVSDYVRAVISTVLSIHDQERTGDILVFLTGQDDIDAAIQLLTEEAQSSG
KQGLVAVPLYSGLPRADQDLVFSPTPRGKRKVIFSTNIAETSLTLEGIVYVVDSGFSKQR
FYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCFRLYTEDYFASEMSIVGIPEIQRS
NLVSCVIQLKALGIDNILGFDWPASPSPEAMIRALEILYSLGVLDDDAKLTSPTGFQVAE
FPLVCF

Transcript Sequence

Gene sequence data has not been registered.